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Author SHA1 Message Date
Andrés Becerra 3fd13726e5 sci-biology/jalview-bin: drop 2.11.5.1 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2026-08-06 16:00:47 -05:00
Andrés Becerra 5e5e5ff64d sci-biology/jalview-bin: add 2.11.5.2 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2026-08-04 15:07:27 -05:00
Anna (cybertailor) Vyalkova c8ae13091f sci-biology/cmdock: fixes 
Bug: https://bugs.gentoo.org/979500
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2026-08-03 02:26:11 +05:00
David Roman 68fbddeaec */*: drop py3.11 & remove dead py impls 
Part-of: https://github.com/gentoo/guru/pull/447
Closes: https://github.com/gentoo/guru/pull/447
Signed-off-by: David Roman <stkw0@disroot.org>
 2026-03-10 10:54:23 +01:00
Andres Becerra 5ebc91534e sci-biology/jalview-bin: drop 2.11.5.0 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2026-01-26 23:05:27 +01:00
Anna (cybertailor) Vyalkova 6e728aa9e7 sci-biology/cmdock: enable py3.13 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2026-01-03 19:28:33 +05:00
Andres Becerra 1342465486 sci-biology/jalview-bin: add 2.11.5.1 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-12-27 19:23:39 +01:00
Andres Becerra 6b5aa4545d sci-biology/jalview-bin: drop 2.11.4.1 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-10-14 21:51:55 +02:00
Andres Becerra 172b5cdd2a sci-biology/cytoscape-bin: drop 3.10.3 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-10-14 21:51:17 +02:00
Andres Becerra 40f4fe42cc sci-biology/cytoscape-bin: add 3.10.4 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-10-03 14:55:34 +02:00
Andres Becerra b1d8f3bebc sci-biology/jalview-bin: add 2.11.5.0 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-10-03 14:47:39 +02:00
Andres Becerra 52a2bbb178 sci-biology/cytoscape-bin: JDK definitively needed instead of JRE 
Signed-off-by: Andres Becerra <andres.becerra@gmail.com>
 2025-04-27 20:34:09 +01:00
Andres Becerra 59228d13e9 sci-biology/jalview-bin: restrict to JVM 17 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2025-03-30 20:05:22 +01:00
Andres Becerra ecbc901dbe sci-biology/jalview-bin: restrict to JVM 17 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2025-03-29 21:37:45 +00:00
Anna (cybertailor) Vyalkova bb0aae8ad3 */*: disable py3.10 
Python 3.10 target is scheduled for removal in Gentoo:
https://public-inbox.gentoo.org/gentoo-dev/e6ca9f1f4ababb79ab2a3d005c39b483c3ecef6e.camel@gentoo.org/

Sphinx 8.2.0 already dropped support for CPython 3.10 and PyPy 3.10,
leading to multiple CI failures in ::guru.

We can safely remove this target, because GURU is "experimental" and
does not have stable keywords.

Let's not remove "pypy3" right now because
a) There are not many packages using it.
b) So we can see which packages supported PyPy 3.10, and test them with
   PyPy 3.11.

Closes: https://github.com/gentoo/guru/pull/291
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2025-02-21 17:51:14 +05:00
Andrés Becerra 07efeeda18 sci-biology/jalview-bin: upgrade to 2.11.4.1 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-11-28 21:05:52 +00:00
Andrés Becerra be8daa1d03 sci-biology/cytoscape-bin: add version 3.10.3 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-11-28 20:59:14 +00:00
Anna (cybertailor) Vyalkova 716c771915 sci-biology/cmdock: add myself as a maintainer 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-10-07 05:25:39 +05:00
Wolfgang Müller b0d9de7fd4 sci-biology/jalview-bin: update Manifest 
Signed-off-by: Wolfgang Müller <wolf@oriole.systems>
 2024-10-01 19:04:10 +02:00
Andrés Becerra 27c76fa765 sci-biology/jalview-bin: bump to 2.11.4.0 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-10-01 16:44:21 +01:00
Anna (cybertailor) Vyalkova de2cb42154 sci-biology/cmdock: fix boinc deps 
Add "--wrapper" to "boinc-app_add_deps" call.

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-08-22 05:27:10 +05:00
Anna (cybertailor) Vyalkova 1a76004eaa sci-biology/cmdock: boinc fixes 
* Update cmdline to the upstream current. Particularly, the option that
  causes CmDock to get stuck in an infinite loop in 1-5% of runs is
  removed.

* Sync with boinc-app.eclass updates.

Closes: https://bugs.gentoo.org/935231
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-07-14 12:27:19 +05:00
Anna (cybertailor) Vyalkova e9427f8954 sci-biology/cmdock: drop 0.2.0-r0 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-07-14 12:27:10 +05:00
Joe Kappus 9d22a109cc */*: switch remaining metadata.xml to https 
gentoo.org 301's to https for a long time now.

Update the stragglers.

Signed-off-by: Joe Kappus <joe@wt.gd>
 2024-06-15 02:15:24 -04:00
Andrés Becerra f09bcd0d42 sci-biology/jalview-bin: add version 2.11.3.3 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-05-24 21:41:39 +01:00
Andrés Becerra b275387250 sci-biology/cytoscape-bin: fix https over http 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-05-24 21:35:21 +01:00
Andrés Becerra fe4ab769d7 sci-biology/cytoscape-bin: add 3.10.2, drop 3.10.1 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-05-24 21:27:06 +01:00
Lucio Sauer 0b616c1310 sci-biology/cytoscape-bin: upgrade HOMEPAGE to https 
Signed-off-by: Lucio Sauer <watermanpaint@posteo.net>
 2024-05-15 04:37:20 +02:00
Lucio Sauer 971c5f4e9e sci-biology/cytoscape-bin: add github upstream metadata 
Signed-off-by: Lucio Sauer <watermanpaint@posteo.net>
 2024-05-15 04:36:26 +02:00
Lucio Sauer 8be6f6ab3f sci-biology/*: fix variable order 
Signed-off-by: Lucio Sauer <watermanpaint@posteo.net>
Signed-off-by: Julien Roy <julien@jroy.ca>
 2024-05-14 20:59:22 -04:00
David Roman 08ec2609da */*: rm sound@, sci-biology@ and proxy-maint@ maintainers 
Signed-off-by: David Roman <davidroman96@gmail.com>
 2024-04-04 19:44:29 +02:00
Julien Roy 3d25d4048d */*: remove empty global variable assigment 
Signed-off-by: Julien Roy <julien@jroy.ca>
 2024-03-21 18:34:41 -04:00
Andrés Becerra 828d452719 sci-biology/cytoscape-bin: new package 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-01-20 20:06:50 +00:00
Anna (cybertailor) Vyalkova a395a6f2cc Revert "sci-biology/cmdock: make python optional" 
This reverts commit d1a766a474.

Closes: https://bugs.gentoo.org/922486
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-01-20 13:39:36 +05:00
Andrés Becerra ad299e5836 sci-biology/jalview-bin: add version 2.11.3.2 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-01-18 18:33:13 +00:00
Andrés Becerra f2f518d846 sci-biology/jalview-bin: fix license 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2024-01-18 18:25:27 +00:00
Anna (cybertailor) Vyalkova d1a766a474 sci-biology/cmdock: make python optional 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-01-16 16:14:42 +05:00
Takuya Wakazono ec4d1b0c2f */*: move {app-doc → app-text}/doxygen 
Signed-off-by: Takuya Wakazono <pastalian46@gmail.com>
 2024-01-13 12:18:38 +09:00
Anna (cybertailor) Vyalkova bf5dd7c748 sci-biology/cmdock: fix build 
Closes: https://bugs.gentoo.org/901345
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-01-09 15:19:50 +05:00
Anna (cybertailor) Vyalkova aa759c4c98 sci-biology/cmdock: drop *really* unused files 
Closes: https://bugs.gentoo.org/921229
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-01-09 14:06:03 +05:00
Anna (cybertailor) Vyalkova 8f10f75977 Revert "sci-biology/cmdock: remove unused patches" 
This reverts commit 1298cd2534.

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2024-01-09 14:06:02 +05:00
Michael Mair-Keimberger 1298cd2534 sci-biology/cmdock: remove unused patches 
Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at>
 2023-12-30 19:20:01 +01:00
Huang Rui 8fb2de166c sci-biology/jalview-bin: add missing Manifest, fix QA 
Signed-off-by: Huang Rui <vowstar@gmail.com>
 2023-11-02 15:51:40 +08:00
Andrés Becerra 00b2cc2eb3 New ebuild for JalView (binary) 
Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
 2023-10-30 20:46:21 +00:00
Viorel Munteanu 9945d10952 */*: reassign cybertailor's packages 
Signed-off-by: Viorel Munteanu <ceamac@gentoo.org>
 2023-10-05 17:04:11 +03:00
Anna (cybertailor) Vyalkova ed9fb41143 sci-biology/geneathome: update app_info.xml 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2023-06-12 22:58:30 +05:00
Anna (cybertailor) Vyalkova 9ea5a49aa1 sci-biology/geneathome: fix build with gcc 13 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2023-06-11 17:14:34 +05:00
Anna (cybertailor) Vyalkova 12088906c5 */*: drop dead py3.9 impl 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2023-05-02 00:45:35 +05:00
Anna (cybertailor) Vyalkova 1e95f22062 */*: update metadata schema uri 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2023-03-04 18:56:32 +05:00
Anna (cybertailor) Vyalkova 5921ae942a sci-biology/cmdock: drop 0.1.4-r2 
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
 2023-02-19 10:26:31 +05:00